PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.E00583.1.p
Common NameMIMGU_mgv1a023426mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family NF-YB
Protein Properties Length: 210aa    MW: 23385.1 Da    PI: 4.4692
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.E00583.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB119.12e-3715106293
             NF-YB   2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrel 93 
                       re ++++P +n++rim+ vlP +  i++dake +q cvsefi f+t+ea+++c+r+ rkt++++d+l a+++lGf dy+epl ++l+k+r  
  Migut.E00583.1.p  15 REANQYMPTTNITRIMRCVLPVHVNIADDAKEAIQVCVSEFINFITAEANNRCHRDYRKTVTPEDVLAAMTSLGFGDYIEPLIIFLNKHRAQ 106
                       799**************************************************************************************975 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.105.4E-408114IPR009072Histone-fold
SuperFamilySSF471139.94E-3119118IPR009072Histone-fold
PfamPF008082.3E-192084IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006151.2E-114866No hitNo description
PRINTSPR006151.2E-116785No hitNo description
PRINTSPR006151.2E-1186104No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 210 aa     Download sequence    Send to blast
MLEEVNQEQQ QGVKREANQY MPTTNITRIM RCVLPVHVNI ADDAKEAIQV CVSEFINFIT  60
AEANNRCHRD YRKTVTPEDV LAAMTSLGFG DYIEPLIIFL NKHRAQQDLE SGSMNQLGRF  120
VWRDDDTGGF VHHQQSQGAH MARSPPPPAP PTAPTMGYYV PLPPPAAGTV EDEEELGEST  180
TVNNAYMSCN YGRGEGSFDG PEFDEFQKF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1n1j_A4e-3015104392NF-YB
4awl_B4e-3015104493NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
4csr_A4e-3015104493NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012846005.11e-133PREDICTED: nuclear transcription factor Y subunit B-8-like
TrEMBLA0A022QUN51e-158A0A022QUN5_ERYGU; Uncharacterized protein
STRINGVIT_19s0015g00580.t011e-36(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA6044436
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21970.16e-39NF-YB family protein